1](2
	 3)(4
	 5)(6
Reset	 7)(8
GND	 9)(10
	11)(12
	13)(14
	15)(16
	17)(18
MOSI	19)(20
MISO	21)(22
SCLK	23)(24
	25)(26
	27)(28
	29)(30
	31)(32
	33)(34
	35)(36
	37)(38
	39)(40

nano /usr/local/etc/avrdude.conf
change to:

programmer
  id    = "linuxgpio";
  desc  = "Use the Linux sysfs interface to bitbang GPIO lines";
  type  = "linuxgpio";
  reset = 4;
  sck   = 11;
  mosi  = 10;
  miso  = 9;
;

If everything is hooked up correctly you should now be about to communicate between the Raspberry Pi and Arduino/AVR.

Time for a quick test;

pi@raspberrypi avrdude-6.2/~ $ sudo avrdude -c linuxgpio -p atmega328p -v
-c Specify the programer type
-p Part Number. Use atmega328p for the Arduino UNO
-v Verbose output